The percentage is not applied to your damage
This is the whole misunderstanding, and it is worth stating flatly before anything else: a hurricane deductible is a percentage of the amount your home is insured for, not a percentage of the loss. The Insurance Information Institute is explicit that these deductibles are calculated against insured value, and gives the arithmetic without softening it — a home insured for $300,000 with a 5 percent hurricane deductible absorbs the first $15,000 of the claim.
Read that again with your own declarations page in hand. If your dwelling coverage is $400,000 and your policy carries a 2 percent hurricane deductible, your deductible for that storm is $8,000. It is $8,000 whether the storm did $9,000 of damage or $250,000 of damage. On the smaller loss you receive $1,000; on a $7,500 loss you receive nothing at all, on a policy you believed had a $1,000 deductible.
The reason this catches people is that the standard deductible on the same policy is usually a flat dollar figure, and it is the one homeowners remember. The percentage deductible is a separate line, applies only to a specific peril, and quietly replaces the flat one the moment that peril is triggered.
Where these deductibles apply
Nineteen states plus the District of Columbia apply hurricane deductibles: Alabama, Connecticut, Delaware, Florida, Georgia, Hawaii, Louisiana, Maine, Maryland, Massachusetts, Mississippi, New Jersey, New York, North Carolina, Pennsylvania, Rhode Island, South Carolina, Texas and Virginia. The typical range is one to five percent of insured value, and higher in coastal high-risk areas where carriers price the exposure more aggressively.
Some states constrain what the carrier may write. Florida requires insurers to offer a $500 option alongside 2, 5 and 10 percent. Rhode Island caps hurricane deductibles at 5 percent. Louisiana draws a distinction the rest of the country largely does not: a hurricane deductible triggers at 74 mph winds, while a named storm deductible triggers at 39 mph — which makes the named-storm version the broader and more expensive of the two for a policyholder, because far more weather events reach 39 mph than reach 74.